CalculatePeakSymmetry: Compute symmetry scores for transition peaks in a peak group...
In shadieshghi/TargetedMSQC: TargetedMSQC for Automated Quality Assessment of Targeted Mass Spectrometry Data
Description
Usage
Arguments
Value
Examples
Description
The function takes a peak group of class peakObj as input and calculates the symmetry score for the transition peaks in the peak group. The symmetry score is defined as the Pearson correlation coefficient between the left and right halves of the peak intensity vector divided at the timepoint in the middle. For high quality peaks, the symmetry score is expected to be close to 1.
Usage
1
CalculatePeakSymmetry(peak, ...)
Arguments
peak
A peak group of class peakObj
Value
A list with the following objects:
r.symmetry: A numeric vector of symmetry scores for each transition in the peak group.
peak.symmetry: Mean of the r.symmetry vector. This score represents the overall symmetry of all the transitions in the peak group.
Examples
1
2
peak <- data.CSF$data$PeakGroup[[1]]
peak.group.symmetry <- CalculatePeakSymmetry(peak)
shadieshghi/TargetedMSQC documentation built on May 13, 2019, 12:20 p.m.
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Description Usage Arguments Value Examples
Description
The function takes a peak group of class peakObj as input and calculates the symmetry score for the transition peaks in the peak group. The symmetry score is defined as the Pearson correlation coefficient between the left and right halves of the peak intensity vector divided at the timepoint in the middle. For high quality peaks, the symmetry score is expected to be close to 1.
Usage
1 | CalculatePeakSymmetry(peak, ...)
|
Arguments
peak |
A peak group of class peakObj |
Value
A list with the following objects: r.symmetry: A numeric vector of symmetry scores for each transition in the peak group. peak.symmetry: Mean of the r.symmetry vector. This score represents the overall symmetry of all the transitions in the peak group.
Examples
1 2 | peak <- data.CSF$data$PeakGroup[[1]]
peak.group.symmetry <- CalculatePeakSymmetry(peak)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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