ApplyPeakBoundary: Extract the peak from a chromatogram by restricting the...
In shadieshghi/TargetedMSQC: TargetedMSQC for Automated Quality Assessment of Targeted Mass Spectrometry Data
Description
Usage
Arguments
Value
Examples
Description
The function takes a peak group of class peakObj and the peak boundary as input. The input peak group is usually a chromatogram with a time range that is wider than the peak of interest. This function extracts peak of interest from the chromatogram by limiting the time and signal intensities of the peak to a range that is within the provided peak boundaries.
Usage
1
ApplyPeakBoundary(peak, boundary, ...)
Arguments
peak
A peak group of class peakObj
boundary
a numeric vector of size two with min start time and max end time of the peak (peak boundaries)
Value
A peak group of class peakObj with time and intensity vectors that are within the boundaries of the peak
Examples
1
2
3
4
chrom <- data.CSF$data$ChromGroup[[1]]
PlotChromPeak(chrom)
peak <- ApplyPeakBoundary(chrom,c(data.CSF$data$MinStartTime[[1]],data.CSF$data$MaxEndTime[[1]]))
PlotChromPeak(peak)
shadieshghi/TargetedMSQC documentation built on May 13, 2019, 12:20 p.m.
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Description Usage Arguments Value Examples
Description
The function takes a peak group of class peakObj and the peak boundary as input. The input peak group is usually a chromatogram with a time range that is wider than the peak of interest. This function extracts peak of interest from the chromatogram by limiting the time and signal intensities of the peak to a range that is within the provided peak boundaries.
Usage
1 | ApplyPeakBoundary(peak, boundary, ...)
|
Arguments
peak |
A peak group of class peakObj |
boundary |
a numeric vector of size two with min start time and max end time of the peak (peak boundaries) |
Value
A peak group of class peakObj with time and intensity vectors that are within the boundaries of the peak
Examples
1 2 3 4 | chrom <- data.CSF$data$ChromGroup[[1]]
PlotChromPeak(chrom)
peak <- ApplyPeakBoundary(chrom,c(data.CSF$data$MinStartTime[[1]],data.CSF$data$MaxEndTime[[1]]))
PlotChromPeak(peak)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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