Files in shaghayeghsoudi/DPclust3p_Customised

Dirichlet Process Clustering Pre-Processing Package

R/allelecount.R R/copynumber.R R/dpclust3p-package.R R/fastPCF.R R/interconvertMutationBurdens.R R/kataegis.R R/preprocessing.R R/qualitycontrol.R R/util.R README.md inst/example/preproc_dpclust_master_file.R inst/example/preproc_pipeline_ascat_simple.R inst/example/preproc_pipeline_caveman.R inst/example/preproc_pipeline_simple.R inst/todo/README.md inst/todo/phasing.R inst/todo/prepare_sv_input.R inst/todo/preprocessing_alternative_phasing.R man/ascatNgsToBattenberg.Rd man/ascatToBattenberg.Rd man/calc_power.Rd man/collate_bb_subclones.Rd man/concat_files.Rd man/createPng.Rd man/createProjectFile.Rd man/dpclust3p.Rd man/dumpCounts.maf.Rd man/extend_bb_cn_categories.Rd man/get_bb_cn_catalog.Rd man/identifyKataegis.Rd man/maf2loci.Rd man/mut_cn_phasing.Rd man/mut_mut_phasing.Rd man/mutationBurdenToMutationCopyNumber.Rd man/mutationCopyNumberToMutationBurden.Rd man/plot_ccf_hist.Rd man/plot_mcn_hist.Rd man/plot_vaf_hist.Rd man/runGetDirichletProcessInfo.Rd man/split_by_chrom.Rd