ascatToBattenberg: Transform ASCAT output into Battenberg

In shaghayeghsoudi/DPclust3p_Customised: Dirichlet Process Clustering Pre-Processing Package

Transform ASCAT output into Battenberg

Description

This function takes the ascat segments, acf and ploidy files to create a minimum Battenberg subclones and rho_and_psi file for use in pre-processing. These files only contain the essentials required by this package.

Usage

ascatToBattenberg(outfile.prefix, segments.file, acf.file, ploidy.file)

Arguments

outfile.prefix	String prefix for the output files. Internally _subclones.txt and _rho_and_psi.txt will be added.
segments.file	String pointing to a segments.txt ASCAT output file
acf.file	String pointing to a acf.txt ASCAT output file
ploidy.file	String pointing to a ploidy.txt ASCAT output file

Author(s)

sd11

shaghayeghsoudi/DPclust3p_Customised documentation built on March 18, 2022, 5:28 a.m.