mut_mut_phasing: Phase mutation to mutation

In shaghayeghsoudi/DPclust3p_Customised: Dirichlet Process Clustering Pre-Processing Package

Phase mutation to mutation

Description

Run mutation to mutation phasing. This function requires the Linkage_pull.pl script in $PATH.

Usage

mut_mut_phasing(loci_file, phased_file, bam_file, bai_file, max_distance)

Arguments

loci_file	A list of loci
phased_file	File to save the output
bam_file	Full path to the bam file
bai_file	Full path to the bai file
max_distance	The max distance of a mutation and SNP can be apart to be considered for phasing

Author(s)

sd11, dw9

shaghayeghsoudi/DPclust3p_Customised documentation built on March 18, 2022, 5:28 a.m.