shahcompbio/signals: Single Cell Genomes with Allele Specificity
signals (SIngle cell Genomes with Allele Specificity) is a tool to estimate allele and haplotype specific copy number states in single cells with low coverage (~0.01X). signals phases alleles based on losses and gains across all cells and then assigns allele specific states for each bin in each cell using a hidden markov model.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Marc J Williams [aut, cre], Tyler Funnell [ctb] |
| Maintainer | Marc J Williams <marcjwilliams1@gmail.com> |
| License | MIT + file LICENSE |
| Version | 0.12.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
