coord_to_arm: Genomic coordinate to chromosome arm

In shahcompbio/signals: Single Cell Genomes with Allele Specificity

Genomic coordinate to chromosome arm

Description

Returns chromosome arms for given chromosome and genomic position.

Usage

coord_to_arm(
  chromosome,
  position,
  assembly = "hg19",
  full = FALSE,
  mergesmallarms = FALSE
)

Arguments

chromosome	Character or numeric vector, with chromosome of genomic coordinate
position	Numeric vector, with genomic position within chromosome
assembly	a string specifying which genome assembly version should be applied to determine chromosome arms. Allowed options are "hg38", hg19", "hg18", "hg17" and "hg16" (corresponding to the five latest human genome annotations in the UCSC genome browser).
full
mergesmallarms	for very small acrocentric arms just use chromosome

Value

Character vector, with choromosome arm of given genomic coordinates

shahcompbio/signals documentation built on Jan. 11, 2025, 2:20 a.m.