Man pages for shahcompbio/signals
Single Cell Genomes with Allele Specificity
| add_gene_locations_to_seurat | Add gene genomic location to seurat object |
| callAlleleSpecificCN | Call allele specific copy number in single cell datasets |
| callAlleleSpecificCNfromHSCN | Call allele specific copy number in single cell datasets |
| callHaplotypeSpecificCN | Call haplotype specific copy number in single cell datasets |
| coord_to_arm | Genomic coordinate to chromosome arm |
| getBins | Make fixed-width bins |
| pipe | Pipe operator |
| plotBAFperstate | Plot BAF distributions per allele specific state |
| plot_clusters_used_for_phasing | Plot clusters used for phasing |
| plotCNprofile | Plot a single cell copy number profile |
| plotCNprofileBAF | Plot a single cell allele specific copy number profile |
| plotHeatmap | Heatmap plot |
| rephasebins | Rephase haplotype copy number |
| scale_color_scCN | Colour scale constructor for scCN (single cell Copy Number)... |
| scale_fill_scCN | Fill scale constructor for scCN (single cell Copy Number)... |
| umap_clustering | Perform UMAP dimensionality reduction and HDBSCAN clustering... |
