parallel_read_bams: Read in BAM files in a parallel manner.
In shahlab/RiboRet: Shah lab RiboRet functions
Description
Usage
Arguments
Value
View source: R/parallel_read_bams.R
Description
This function simply reads BAM files in using parallel's mclapply and
GenomicAlignments readGAlignments. It results in a named list of bam files.
By default, this reads all BAMs it can find, if you want to use a subset of
BAMs from a folder, you make your own named list of BAM files.
Usage
1
parallel_read_bams(dirWithBams, ncores)
Arguments
dirWithBams
path to a directory with bam files in it, it will only.
attempt to read things that end in .bam.
ncores
the number of cores to use, typically 1 per bam.
Value
A list of bams read in using readGAlignments.
shahlab/RiboRet documentation built on Dec. 23, 2021, 1:17 a.m.
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Description Usage Arguments Value
View source: R/parallel_read_bams.R
Description
This function simply reads BAM files in using parallel's mclapply and GenomicAlignments readGAlignments. It results in a named list of bam files. By default, this reads all BAMs it can find, if you want to use a subset of BAMs from a folder, you make your own named list of BAM files.
Usage
1 | parallel_read_bams(dirWithBams, ncores)
|
Arguments
dirWithBams |
path to a directory with bam files in it, it will only. attempt to read things that end in .bam. |
ncores |
the number of cores to use, typically 1 per bam. |
Value
A list of bams read in using readGAlignments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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