tally_reads: Count reads at positions given an offset
In shahlab/RiboRet: Shah lab RiboRet functions
Description
Usage
Arguments
Value
Description
This function counts the number of reads with 3' ends at a given position and
separates them by read lengths.
Usage
1
tally_reads(bamList, offset, ncores)
Arguments
bamList
A named list of bam files, presumably from the remove_contam_reads function
offset
A data frame of columns qwidth, offset, specifying the read length specific offsets
Value
A single data frame with counts per position per read length for all samples
shahlab/RiboRet documentation built on Dec. 23, 2021, 1:17 a.m.
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Description Usage Arguments Value
Description
This function counts the number of reads with 3' ends at a given position and separates them by read lengths.
Usage
1 | tally_reads(bamList, offset, ncores)
|
Arguments
bamList |
A named list of bam files, presumably from the remove_contam_reads function |
offset |
A data frame of columns qwidth, offset, specifying the read length specific offsets |
Value
A single data frame with counts per position per read length for all samples
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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