Man pages for shambam/cellexalvrR
Provides the backend calculations for CellexalVR

addMDS2cellexalvrAdds mds coordinates to a cellexalvrObj
as_BioData-methodsdescription of function as
cellexalvr-classClass defintion of cellexalvr
changeIdentSets new cell indentities from a given list
checkVRfilescheckVRfiles: Checks the existance of all VR specific files...
EpigeneticA simple table containing the data from...
export2cellexalvrCreates the base files needed to run the VR environment
exportUserGroups4vrCreates a summary file for the vr process
get.genes.cor.toGets positively and negatively correlated genes to a chosen...
groupingInforeturns the information stored for the last grouping read
human.tfsA list of human transcription factors.
loadObjectLoads the cellexalvr object, if the fname is a file
lockedSaveSaving the RData in the VR tool might create a problem. Hence...
make.cellexalvr.heatmapCreates a heatmap from a selection of groups
make.cellexalvr.networkCreates a network from selected groups for selected genes
mouse.tfsA list of mouse transcription factors.
onlyGOIsAllows the user to select only (G)enes (O)f (I)nterest lists...
oscilliatingGenesIdentifies oscilliating genes and tries to group them in...
print-methodsdescription of function print
reduceTo-methodsdescription of function reduceTo
renew-methodsdescription of function renew
reorder.genes-methodsdescription of function remove.genes
reorder.samples-methodsdescription of function remove.genes
run.ddrtreeRuns DDRtree for a Seurat class
set.specieLoads TF annotation into cellexalvr object
seurat2cellexalvrConverts a seurat class to one of cellexalvr
show-methodsdescription of function show
useInbuiltGOIlists-methodsdescription of function useInbuiltGOIlists
userGroupingReads a VR grouping file and creates a user.grouping column...
shambam/cellexalvrR documentation built on Nov. 18, 2017, 9:21 p.m.