getDifferentials: Creates a heatmap from a selection of groups
In shambam/cellexalvrR: Provides the backend calculations for CellexalVR
Description
Creates a heatmap from a selection of groups
Usage
1
2
getDifferentials(cellexalObj, cellidfile, deg.method = c("anova", "edgeR",
"MAST"), num.sig)
Arguments
cellexalObj
A cellexalvr object
cellidfile
file containing cell IDs
deg.method
The method to use to find DEGs
numsig
The number of differentials to be returned
shambam/cellexalvrR documentation built on May 29, 2019, 9:35 a.m.
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Description
Creates a heatmap from a selection of groups
Usage
1 2 | getDifferentials(cellexalObj, cellidfile, deg.method = c("anova", "edgeR",
"MAST"), num.sig)
|
Arguments
cellexalObj |
A cellexalvr object |
cellidfile |
file containing cell IDs |
deg.method |
The method to use to find DEGs |
numsig |
The number of differentials to be returned |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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