Files in sharksmhi/SHARK4R

Retrieving, Analyzing, and Validating Marine Data from SHARK and Nordic Microalgae

LICENSE.md R/SHARK4R-package.R R/algaebase_api_functions.R R/check_codes.R R/check_depth.R R/check_fields.R R/check_logical.R R/check_onland.R R/check_outliers.R R/check_stations.R R/defunct.R R/dyntaxa_api_functions.R R/hab_api_functions.R R/ifcb_is_near_land.R R/ifcb_which_basin.R R/match_taxa.R R/nua_api_functions.R R/plot_map_leaflet.R R/scatterplot.R R/shark_api_functions.R R/shark_read.R R/util.R R/worms_api_functions.R R/xylookup.R R/zzz.R README.md man/SHARK4R-package.Rd man/add_hierarchy_column.Rd man/add_worms_taxonomy.Rd man/assign_phytoplankton_group.Rd man/check_Bacterioplankton.Rd man/check_Chlorophyll.Rd man/check_Epibenthos.Rd man/check_EpibenthosDropvideo.Rd man/check_GreySeal.Rd man/check_HarbourPorpoise.Rd man/check_HarbourSeal.Rd man/check_PhysicalChemical.Rd man/check_Phytoplankton.Rd man/check_Picoplankton.Rd man/check_PrimaryProduction.Rd man/check_RingedSeal.Rd man/check_SealPathology.Rd man/check_Sedimentation.Rd man/check_Zoobenthos.Rd man/check_Zooplankton.Rd man/check_algaebase_api.Rd man/check_bacterial_carbon.Rd man/check_bacterial_concentration.Rd man/check_bacterial_production.Rd man/check_chlorophyll_conc.Rd man/check_code_proj.Rd man/check_datatype.Rd man/check_deliv_Bacterioplankton.Rd man/check_deliv_Chlorophyll.Rd man/check_deliv_Epibenthos.Rd man/check_deliv_EpibenthosDropvideo.Rd man/check_deliv_GreySeal.Rd man/check_deliv_HarbourPorpoise.Rd man/check_deliv_HarbourSeal.Rd man/check_deliv_PhysicalChemical.Rd man/check_deliv_Phytoplankton.Rd man/check_deliv_Picoplankton.Rd man/check_deliv_PrimaryProduction.Rd man/check_deliv_RingedSeal.Rd man/check_deliv_SealPathology.Rd man/check_deliv_Sedimentation.Rd man/check_deliv_Zoobenthos.Rd man/check_deliv_Zooplankton.Rd man/check_depth.Rd man/check_epibenthos_abundclass_logical.Rd man/check_epibenthos_counted.Rd man/check_epibenthos_cover_logical.Rd man/check_epibenthos_coverclass_logical.Rd man/check_epibenthos_coverpercent_logical.Rd man/check_epibenthos_dryweight.Rd man/check_epibenthos_sedimentdepos_logical.Rd man/check_epibenthos_specdistr_maxdepth.Rd man/check_epibenthos_specdistr_mindepth.Rd man/check_epibenthos_totcover_logical.Rd man/check_greyseal_counted.Rd man/check_harbourseal_counted.Rd man/check_harbporp_positivemin.Rd man/check_onland.Rd man/check_phytoplankton_abund.Rd man/check_phytoplankton_biovol.Rd man/check_phytoplankton_carbon.Rd man/check_picoplankton_abundance.Rd man/check_picoplankton_biovol.Rd man/check_picoplankton_carbon.Rd man/check_picoplankton_counted.Rd man/check_primaryproduction_carbonprod.Rd man/check_primaryproduction_carbonprod_hour.Rd man/check_primaryproduction_carbonprodlight.Rd man/check_ringedseal_calccounted.Rd man/check_station_distance.Rd man/check_value_logical.Rd man/check_zero_positions.Rd man/check_zero_value.Rd man/check_zoobenthos_BQIm.Rd man/check_zoobenthos_BQIm_logical.Rd man/check_zoobenthos_abund.Rd man/check_zoobenthos_counted.Rd man/check_zoobenthos_wetweight.Rd man/check_zoobenthos_wetweight_logical.Rd man/check_zooplankton_abund.Rd man/check_zooplankton_carbon.Rd man/check_zooplankton_counted.Rd man/check_zooplankton_length_mean.Rd man/check_zooplankton_length_median.Rd man/check_zooplankton_wetweight.Rd man/check_zooplankton_wetweight_area.Rd man/check_zooplankton_wetweight_volume.Rd man/construct_dyntaxa_missing_table.Rd man/construct_dyntaxa_table.Rd man/defunct.Rd man/extract_algaebase_field.Rd man/fill_na_below_first_non_na.Rd man/find_descendants.Rd man/get_algaebase_genus.Rd man/get_algaebase_species.Rd man/get_all_parents.Rd man/get_dyntaxa_children_hierarchy.Rd man/get_dyntaxa_children_ids.Rd man/get_dyntaxa_dwca.Rd man/get_dyntaxa_parent_ids.Rd man/get_dyntaxa_records.Rd man/get_hab_list.Rd man/get_hierarchy.Rd man/get_nua_external_links.Rd man/get_nua_harmfulness.Rd man/get_nua_media_links.Rd man/get_nua_taxa.Rd man/get_shark_data.Rd man/get_shark_options.Rd man/get_shark_table.Rd man/get_shark_table_counts.Rd man/get_toxin_list.Rd man/get_worms_records.Rd man/get_worms_records_name.Rd man/ifcb_is_near_land.Rd man/ifcb_which_basin.Rd man/lookup_xy.Rd man/match_algaebase.Rd man/match_dyntaxa.Rd man/match_station.Rd man/match_taxon_name.Rd man/match_wormstaxa.Rd man/nominal_station.Rd man/parse_scientific_names.Rd man/plot_map_leaflet.Rd man/plot_map_leaflet_deliv.Rd man/scatterplot.Rd man/shark_read.Rd man/shark_read_deliv.Rd man/shark_read_deliv_xls.Rd man/shark_read_zip.Rd man/update_dyntaxa_taxonomy.Rd man/update_worms_taxonomy.Rd products/check_bact_delivery.Rmd products/check_chl_delivery.Rmd products/check_data.Rmd products/check_epi_delivery.Rmd products/check_epi_drop_delivery.Rmd products/check_grey_delivery.Rmd products/check_harbp_delivery.Rmd products/check_harbs_delivery.Rmd products/check_phychem_delivery.Rmd products/check_phyto_delivery.Rmd products/check_pico_delivery.Rmd products/check_pp_delivery.Rmd products/check_ring_delivery.Rmd products/check_sealpat_delivery.Rmd products/check_sed_delivery.Rmd products/check_zoob_delivery.Rmd products/check_zoop_delivery.Rmd products/report.Rmd products/server.R products/ui.R scripts/get_data_for_range_and_outliers.Rmd vignettes/quality_control.Rmd vignettes/retrieve_algaebase_data.Rmd vignettes/retrieve_dyntaxa_data.Rmd vignettes/retrieve_hab_data.Rmd vignettes/retrieve_nordic_microalgae_data.Rmd vignettes/retrieve_shark_data.Rmd vignettes/retrieve_worms_data.Rmd