NEWS.md

In shaunpwilkinson/kmer: Fast K-Mer Counting and Clustering for Biological Sequence Analysis

kmer 1.1.2 (2019-05-20)

• Fixed a bug in kcount that was preventing the deconstruction of alignments prior to kmer counting. Thanks to Prof. Gianluigi Cardinali for the bug report

kmer 1.1.1

• Specified previous version of set.seed sampler with RNGversion() calls

kmer 1.1.0

• Added "central", "centroid" and "farthest" options for OTU clustering
• Increased sequence hashing speed
• Edits made to vignette to improve clarity
• Enforced a maximum kmer size of 12 for DNA to avoid overflow

kmer 1.0.2

• Resolved bug in kcount where sequence disambiguation was prevented by sapply failing to simplify NULL values.

• Enabled users to manually control compression of amino acid sequences in kcount via new 'compress' argument. Thanks to Thomas Shafee for suggestion.

kmer 1.0.1

• Fixed bug in otu that prevented additional arguments being passed to nested functions via "dots".

kmer 1.0.0

• Sumbitted to CRAN 2018-03-05.

shaunpwilkinson/kmer documentation built on June 3, 2019, 4:17 a.m.