Files in shdam/cyCombine
Robust integration of single-cell cytometry datasets within and across technologies
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/01_prepare_data.R
R/02_batch_correct.R
R/03_panel_merging.R
R/04_export_data.R
R/data.R
R/detect_batch_effect.R
R/evaluate_performance.R
R/globals.R
R/utils_analysis.R
R/utils_helper.R
R/utils_pipe.R
R/utils_plotting.R
README.Rmd
README.md
cyCombine.Rproj
data/non_markers.rda
inst/cyCombine.png
man/batch_correct.Rd
man/compile_fcs.Rd
man/compute_emd.Rd
man/compute_mad.Rd
man/convert_flowset.Rd
man/correct_data.Rd
man/correct_data_alt.Rd
man/create_som.Rd
man/detect_batch_effect.Rd
man/detect_batch_effect_express.Rd
man/df2SCE.Rd
man/evaluate_emd.Rd
man/evaluate_mad.Rd
man/get_markers.Rd
man/impute_across_panels.Rd
man/non_markers.Rd
man/normalize.Rd
man/pipe.Rd
man/plot_density.Rd
man/plot_dimred.Rd
man/plot_dimred_full.Rd
man/plot_save_four.Rd
man/plot_save_two.Rd
man/plot_umap_labels.Rd
man/prepare_data.Rd
man/quantile_norm.Rd
man/run_analysis.Rd
man/salvage_problematic.Rd
man/transform_asinh.Rd
tests/testthat.R
tests/testthat/test-get_markers.R
vignettes/cyCombine.Rmd
vignettes/cyCombine.html
vignettes/detect_batch_effects.Rmd
vignettes/detect_batch_effects.html
vignettes/panel_merging.Rmd
vignettes/panel_merging.html
