plot_dimred_full: Dimensionality reduction plots - colored with labels, batches...

In shdam/cyCombine: Robust integration of single-cell cytometry datasets within and across technologies

Dimensionality reduction plots - colored with labels, batches and marker expression

Description

Dimensionality reduction plots - colored with labels, batches and marker expression

Usage

plot_dimred_full(
  df,
  name,
  type = "umap",
  markers = NULL,
  seed = 473,
  out_dir = NULL
)

Arguments

df	tibble of data to plot
name	Name of the output plot
type	Type of dimensionality reduction ("umap" or "pca")
markers	Markers to include in dimensionality reduction
seed	For reproducibility
out_dir	Directory to put output figures

See Also

Other plot: plot_density(), plot_dimred(), plot_save_four(), plot_save_two(), plot_umap_labels()

shdam/cyCombine documentation built on June 12, 2022, 11:29 p.m.