plot_dimred: Dimensionality reduction plot

In shdam/cyCombine: Robust integration of single-cell cytometry datasets within and across technologies

Dimensionality reduction plot

Description

Dimensionality reduction plot

Usage

plot_dimred(
  df,
  name,
  type = "umap",
  plot = "batch",
  markers = NULL,
  seed = 473,
  return_coord = FALSE
)

Arguments

df	tibble of data to plot
name	Name of the output plot
type	Type of dimensionality reduction ("umap" or "pca")
plot	The column to use for coloring
markers	Markers to include in dimensionality reduction
seed	For reproducibility
return_coord	Return coordinates and not just the plot

See Also

Other plot: plot_density(), plot_dimred_full(), plot_save_four(), plot_save_two(), plot_umap_labels()

Examples

## Not run: 
uncor_umap <- plot_dimred(uncorrected, "Uncorrected", markers = markers)

## End(Not run)

shdam/cyCombine documentation built on June 12, 2022, 11:29 p.m.