sojourner: sojourner - statistical analysis of single molecule...
In sheng-liu/sojourner: Statistical analysis of single molecule trajectories
Description
Single molecule tracking reports live biophysical properties of
molecules being investigated besides their coding sequence. It has evolved
as a novel approach complementing genomic sequencing. Here we provided
“sojourner” package, to address statistical and bioinformatic needs
related to the analysis and comprehension of high throughput single
molecule tracking data.
Details
sojourner package provides statistical analysis of biophysical
properties of single molecules. Current version primarily uses mean square
displacement (MSD) based analysis, more functions using displacement based
and hidden Markov model based method will be added in future release.
Current version includes: dwellTime (duration of the tracks), squareDisp
(squared displacement), MSD (mean square displacement), Dcoef(diffusion
coefficient), CDF(cumulative distribution function), etc., and various
plotting functions for visulization. It also includes a graphical user
interface (GUI) sojournerGUI(). The GUI version has the most frequently
used functions but not all command line ones.
sheng-liu/sojourner documentation built on April 2, 2021, 2:30 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Single molecule tracking reports live biophysical properties of molecules being investigated besides their coding sequence. It has evolved as a novel approach complementing genomic sequencing. Here we provided “sojourner” package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.
Details
sojourner package provides statistical analysis of biophysical properties of single molecules. Current version primarily uses mean square displacement (MSD) based analysis, more functions using displacement based and hidden Markov model based method will be added in future release.
Current version includes: dwellTime (duration of the tracks), squareDisp (squared displacement), MSD (mean square displacement), Dcoef(diffusion coefficient), CDF(cumulative distribution function), etc., and various plotting functions for visulization. It also includes a graphical user interface (GUI) sojournerGUI(). The GUI version has the most frequently used functions but not all command line ones.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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