combineTrackll-methods: combineTrackll

In sheng-liu/sojourner: Statistical analysis of single molecule trajectories

Description

Combine multiple tracklls into one trackll.

Usage

combineTrackll(trackll,name='combined trackll',merged=TRUE)

Arguments

trackll	The tracklls to be combined together.
name	a character string given to set the 'names' attribute for the combined trackll
merged	An Logical indicate if the tracklls to combine are merged or not.

Details

Combine multiple track lists (tracklls) from multiple folders into one trackll, i.e. combining track infomation from files in multiple folders (replicates) together as if they are in one folder. The tracklls can be either merged or un-merged.

The name argument sets the 'names' attribute for the combined trackll, which will be used in the same way as the folder names for the original tracklls, e.g., displayed as legend when plotting Dcoef or MSD for the combined trackll.

Value

• trackll: combined trackll.

Examples

# Generate trackll, and process, 
# e.g. mask region of interest, merge tracks from multiple files.
folder1=system.file('extdata','HSF',package='sojourner')
trackll1=createTrackll(folder1,input=3, cores = 2)
trackll1=maskTracks(folder1,trackll1)
trackll1=mergeTracks(folder1,trackll1)

folder2=system.file('extdata','HSF_2',package='sojourner')
trackll2=createTrackll(folder2,input=2, cores = 2)
trackll2=maskTracks(folder2,trackll2)
trackll2=mergeTracks(folder2,trackll2)

# Combine the tracklls together, input trackll names when prompted,
trackll=combineTrackll(trackll=c(trackll1,trackll2),merged=TRUE)

sheng-liu/sojourner documentation built on April 2, 2021, 2:30 a.m.