noGapToGap | R Documentation |
Take a reference sequence with gaps and coordinates in the ungapped reference sequence and translate the coordinates to the corresponding positions in the gapped sequence
noGapToGap(refSeq, coords, gapChars = c("*", ".", "-"))
refSeq |
the sequence containing gaps |
coords |
coordinates on the ungapped refSeq to be converted into equivalent gapped coordinates |
gapChars |
characters interpreted as gaps |
A vector of coordinates in the gapped reference sequence
noGapToGap('AA--AA-A',c(1:5))
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