multiMismatch: Find fewest mismatches for multiple patterns

In sherrillmix/levenR: Simple Levenshtein Alignment and Distance Calculation

Find fewest mismatches for multiple patterns

Description

Find fewest mismatches (and position if desired) between pattern and string without allowing gaps. Could be programmed better but quick enough for now

Usage

multiMismatch(patterns, subject, drop = TRUE, ...)

Arguments

patterns	A vector of string patterns to search for in subject
subject	A single subject string to search in
drop	If TRUE return only return the first best match
...	Additional arguments for bestMismatch

Value

Three column matrix with columns minMismatch, position, pattern number

Author(s)

Scott Sherrill-Mix [e-mail]

sherrillmix/levenR documentation built on Oct. 25, 2023, 11:42 a.m.