API for sherrillmix/taxonomizr
Functions to Work with NCBI Accessions and Taxonomy
| Global functions | |
|---|---|
| accessionToTaxa | Man page Source code |
| checkDownloadMd5 | Source code |
| condenseTaxa | Man page Source code |
| getAccession2taxid | Man page Source code |
| getAccessions | Man page Source code |
| getCommon | Man page Source code |
| getDescendants | Man page Source code |
| getId | Man page Source code |
| getId2 | Man page Source code |
| getNamesAndNodes | Man page Source code |
| getParentNodes | Source code |
| getRawTaxonomy | Man page |
| getTaxonomy | Man page Source code |
| getTaxonomy2 | Man page Source code |
| lastNotNa | Man page Source code |
| makeNewick | Man page Source code |
| normalizeTaxa | Man page Source code |
| prepareDatabase | Man page Source code |
| read.accession2taxid | Man page Source code |
| read.names | Man page Source code |
| read.names.sql | Man page Source code |
| read.nodes | Man page Source code |
| read.nodes.sql | Man page Source code |
| resumableDownload | Man page Source code |
| streamingRead | Man page Source code |
| taxonomizr | Man page |
| taxonomizr-package | Man page |
| taxonomizrSwitch | Man page |
| topoSort | Man page Source code |
| trimTaxa | Man page Source code |
