Files in sherrillmix/taxonomizr

Functions to Work with NCBI Accessions and Taxonomy

.Rbuildignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/taxa.R README.Rmd

README.html

README.md

docs/404.html

docs/LICENSE-text.html

docs/articles/index.html

docs/articles/usage.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/accessionToTaxa.html

docs/reference/condenseTaxa.html

docs/reference/getAccession2taxid.html

docs/reference/getAccessions.html

docs/reference/getCommon.html

docs/reference/getDescendants.html

docs/reference/getId.html

docs/reference/getId2.html

docs/reference/getNamesAndNodes.html

docs/reference/getRawTaxonomy.html

docs/reference/getTaxonomy.html

docs/reference/getTaxonomy2.html

docs/reference/index.html

docs/reference/lastNotNa.html

docs/reference/makeNewick.html

docs/reference/normalizeTaxa.html

docs/reference/prepareDatabase.html

docs/reference/read.accession2taxid.html

docs/reference/read.names.html

docs/reference/read.names.sql.html

docs/reference/read.nodes.html

docs/reference/read.nodes.sql.html

docs/reference/resumableDownload.html

docs/reference/streamingRead.html

docs/reference/taxonomizr-package.html

docs/reference/taxonomizrSwitch.html

docs/reference/topoSort.html

docs/reference/trimTaxa.html

docs/sitemap.xml

inst/testdata/fakeNamesNodes.tar.gz

makefile

man/accessionToTaxa.Rd man/condenseTaxa.Rd man/getAccession2taxid.Rd man/getAccessions.Rd man/getCommon.Rd man/getDescendants.Rd man/getId.Rd man/getId2.Rd man/getNamesAndNodes.Rd man/getRawTaxonomy.Rd man/getTaxonomy.Rd man/getTaxonomy2.Rd man/lastNotNa.Rd man/makeNewick.Rd man/normalizeTaxa.Rd man/prepareDatabase.Rd man/read.accession2taxid.Rd man/read.names.Rd man/read.names.sql.Rd man/read.nodes.Rd man/read.nodes.sql.Rd man/resumableDownload.Rd man/streamingRead.Rd man/taxonomizr-package.Rd man/taxonomizrSwitch.Rd man/topoSort.Rd man/trimTaxa.Rd

src/taxaTrim.c

src/taxonomizr-init.c

tests/testthat.R tests/testthat/test_taxa.R

usage.template

vignettes/usage.Rmd

sherrillmix/taxonomizr documentation built on Jan. 26, 2024, 11:01 a.m.