csBoxplot: csBoxplot
In shiauck/cummeRbund_on_RSQLite2.0: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Description Usage Arguments Details Value Note Author(s) References Examples

Creates a ggplot2 plot object with a geom_box layer displaying summary statistics for FPKM values across samples (x).

1 2	## S4 method for signature 'CuffData' csBoxplot(object, logMode=TRUE, pseudocount=0.0001, replicates=FALSE,...)

`object`	An object of class CuffData.
`logMode`	A logical argument to log10 -transform FPKM values.
`pseudocount`	Value added to FPKM to avoid log-transform issues.
`replicates`	A logical value whether or not to plot individual replicates or aggregate condition values.
`...`	Additional arguments to csBoxplot

None

A ggplot2 plot object with a geom_box layer.

None

Loyal A. Goff

None

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	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create CuffSet object
	genes<-a@genes #CuffData object for all genes
	csBoxplot(genes)