dispersionPlot: Mean count vs dispersion plot
In shiauck/cummeRbund_on_RSQLite2.0: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Description
Usage
Arguments
Details
Value
Note
Author(s)
References
Examples
Description
A scatter plot comparing the mean counts against the estimated dispersion for a given level of features from a cuffdiff run.
Usage
1
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4
## S4 method for signature 'CuffData'
dispersionPlot(object)
## S4 method for signature 'CuffSet'
dispersionPlot(object)
Arguments
object
An object of class ('CuffData')
Details
None
Value
ggplot object with geom_point layer
Note
None
Author(s)
Loyal A. Goff
References
None
Examples
1
2
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4
a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Create CuffSet object from sample data
genes<-genes(a) #Create CuffData object for all genes
d<-dispersionPlot(genes) #Create plot object
d #render plot object
shiauck/cummeRbund_on_RSQLite2.0 documentation built on May 5, 2019, 12:33 p.m.
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Description Usage Arguments Details Value Note Author(s) References Examples
Description
A scatter plot comparing the mean counts against the estimated dispersion for a given level of features from a cuffdiff run.
Usage
1 2 3 4 | ## S4 method for signature 'CuffData'
dispersionPlot(object)
## S4 method for signature 'CuffSet'
dispersionPlot(object)
|
Arguments
object |
An object of class ('CuffData') |
Details
None
Value
ggplot object with geom_point layer
Note
None
Author(s)
Loyal A. Goff
References
None
Examples
1 2 3 4 | a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Create CuffSet object from sample data
genes<-genes(a) #Create CuffData object for all genes
d<-dispersionPlot(genes) #Create plot object
d #render plot object
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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