ReadMetaDataFromPmcidEfetchDoc: ReadMetaDataFromPmcidEfetchDoc

In shihikoo/pubmedTools: Tools for retriving information from PubMed database

Description

ReadMetaDataFromPmcidEfetchDoc

Usage

ReadMetaDataFromPmcidEfetchDoc(
  doc,
  columns = c("pmid", "title", "abstract", "fulltext", "studytype", "journal",
    "publisher", "publicationDate", "authors", "emails", "affiliations",
    "correspondingAuthors", "correspondingAuthorAffs")
)

Arguments

doc	a XMLInternalDocument, a XMLAbstractDocument
columns	list of output columns

Value

a nx3 data frame. With three columns: pmcid, pmid, doi

Examples

doc <- GetDoc(id=c("2823164"), db="pmc", endpoint="efetch")
ReadMetaDataFromPmcidEfetchDoc(doc)

doc <- GetDoc(id=c("2823164", "3324826", "3339580"), db="pmc", endpoint="efetch")
ReadMetaDataFromPmcidEfetchDoc(doc)

doc <- GetDoc(id=c("4812069","3892617"), db="pmc", endpoint="efetch")
ReadMetaDataFromPmcidEfetchDoc(doc)

doc <- GetDoc(id=c("4405051","4415024","4804230"), db="pmc", endpoint="efetch")
ReadMetaDataFromPmcidEfetchDoc(doc, c("pmid","title"))

shihikoo/pubmedTools documentation built on June 19, 2021, 9:56 a.m.