Files in shimlab/HMTree
Hidden Markov tree prior for analysis of multiple functional data
.gitignore
DESCRIPTION
HMTree.Rproj
NAMESPACE
NEWS
R/MLE.se.logitp.R
R/RcppExports.R
R/denoise_1D.R
R/doppler.f.R
R/estimate.logp.overallintensity.R
R/glm_approx.R
R/haar.aggregate.R
R/heaviside.f.R
R/reflectSignal.R
R/simulate.data.R
R/simulate_true_curve.R
R/spike.f.R
README.md
docs/.DS_Store
docs/HMTree_demo.R
docs/HMTree_demo.Rmd
docs/HMTree_demo.html
docs/Self_test.R
docs/build_HMTree.html
docs/build_HMTree.org
docs/build_HMTree.pdf
docs/build_HMTree.tex
docs/nout.RData
docs/output/hmt_1024_normal 2.txt
docs/output/hmt_1024_normal.txt
docs/output/hmt_1024_normal.wavelets_coef 2.txt
docs/output/hmt_1024_normal.wavelets_coef.txt
docs/output/hmt_1024_normal_denoised 2.txt
docs/output/hmt_1024_normal_denoised.param_marginal_probs 2.txt
docs/output/hmt_1024_normal_denoised.param_marginal_probs.txt
docs/output/hmt_1024_normal_denoised.param_sigma_sqr 2.txt
docs/output/hmt_1024_normal_denoised.param_sigma_sqr.txt
docs/output/hmt_1024_normal_denoised.param_transition_probs 2.txt
docs/output/hmt_1024_normal_denoised.param_transition_probs.txt
docs/output/hmt_1024_normal_denoised.post_probs 2.txt
docs/output/hmt_1024_normal_denoised.post_probs.txt
docs/output/hmt_1024_normal_denoised.post_transition_probs 2.txt
docs/output/hmt_1024_normal_denoised.post_transition_probs.txt
docs/output/hmt_1024_normal_denoised.txt
docs/output/hmt_1024_normal_denoised.wavelets_coef 2.txt
docs/output/hmt_1024_normal_denoised.wavelets_coef.txt
docs/output/hmt_1024_poisson 2.txt
docs/output/hmt_1024_poisson.txt
docs/output/hmt_1024_poisson.wavelets_coef 2.txt
docs/output/hmt_1024_poisson.wavelets_coef.txt
docs/output/hmt_1024_poisson_denoised 2.txt
docs/output/hmt_1024_poisson_denoised 3.txt
docs/output/hmt_1024_poisson_denoised 4.txt
docs/output/hmt_1024_poisson_denoised.param_marginal_probs 2.txt
docs/output/hmt_1024_poisson_denoised.param_marginal_probs.txt
docs/output/hmt_1024_poisson_denoised.param_sigma_sqr 2.txt
docs/output/hmt_1024_poisson_denoised.param_sigma_sqr 3.txt
docs/output/hmt_1024_poisson_denoised.param_sigma_sqr 4.txt
docs/output/hmt_1024_poisson_denoised.param_sigma_sqr.txt
docs/output/hmt_1024_poisson_denoised.param_transition_probs 2.txt
docs/output/hmt_1024_poisson_denoised.param_transition_probs 3.txt
docs/output/hmt_1024_poisson_denoised.param_transition_probs 4.txt
docs/output/hmt_1024_poisson_denoised.param_transition_probs.txt
docs/output/hmt_1024_poisson_denoised.post_probs 2.txt
docs/output/hmt_1024_poisson_denoised.post_probs 3.txt
docs/output/hmt_1024_poisson_denoised.post_probs 4.txt
docs/output/hmt_1024_poisson_denoised.post_probs.txt
docs/output/hmt_1024_poisson_denoised.post_transition_probs 2.txt
docs/output/hmt_1024_poisson_denoised.post_transition_probs 3.txt
docs/output/hmt_1024_poisson_denoised.post_transition_probs 4.txt
docs/output/hmt_1024_poisson_denoised.post_transition_probs.txt
docs/output/hmt_1024_poisson_denoised.txt
docs/output/hmt_1024_poisson_denoised.wavelets_coef 2.txt
docs/output/hmt_1024_poisson_denoised.wavelets_coef 3.txt
docs/output/hmt_1024_poisson_denoised.wavelets_coef 4.txt
docs/output/hmt_1024_poisson_denoised.wavelets_coef.txt
docs/output/pois_1024 2.txt
docs/output/pois_1024.txt
docs/output/pois_1024.wavelets_coef 2.txt
docs/output/pois_1024.wavelets_coef.txt
docs/output/pois_1024_denoised 2.txt
docs/output/pois_1024_denoised.param_marginal_probs 2.txt
docs/output/pois_1024_denoised.param_marginal_probs.txt
docs/output/pois_1024_denoised.param_sigma_sqr 2.txt
docs/output/pois_1024_denoised.param_sigma_sqr.txt
docs/output/pois_1024_denoised.param_transition_probs 2.txt
docs/output/pois_1024_denoised.param_transition_probs.txt
docs/output/pois_1024_denoised.post_probs 2.txt
docs/output/pois_1024_denoised.post_probs.txt
docs/output/pois_1024_denoised.post_transition_probs 2.txt
docs/output/pois_1024_denoised.post_transition_probs.txt
docs/output/pois_1024_denoised.txt
docs/output/pois_1024_denoised.wavelets_coef 2.txt
docs/output/pois_1024_denoised.wavelets_coef.txt
docs/pout.RData
man/.Rapp.history
man/HMTree.denoise_1D.Rd
man/HMTree.parameter.Rd
man/MLE.se.logitp.Rd
man/bintest.Rd
man/estimate.logp.overallintensity.Rd
man/gen.curves.Rd
man/glm.approx.Rd
man/haar.aggregate.Rd
man/reflectSignal.Rd
man/safe.quasibinomial.glm.fit.Rd
man/simu.curves.Rd
man/simulate_true_curve.Rd
man/v3.Rd
man/vs.Rd
man/vss.Rd
src/.DS_Store
src/RcppExports.cpp
src/denoise_1D.cpp
src/dwt.cpp
src/em_1D.cpp
src/exvar.h
src/general.h
src/hmt.h
src/old/.DS_Store
src/old/dwt.cpp
src/old/hmm_chrom_funcs.cpp
src/old/hmm_chrom_funcs.h
src/old/hmt.h
src/old/post_1D.cpp
src/old/rpHMT.cpp
src/routines_Poisson_HMT.cpp
src/uhmt.cpp
