estimate.logp.overallintensity: Take a series of Poisson count signals x, with data on...

Description Usage

View source: R/estimate.logp.overallintensity.R

Description

Take a series of Poisson count signals x, with data on different samples in each row, and compute mean and variance of log(p) [log(mu) if read.depth is not provided] for overall intensity. optionally estimate the "effect" of a covariate g if g is provided.

Usage

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estimate.logp.overallintensity(x, g = NULL, read.depth = NULL,
  reflect = FALSE, center = FALSE, repara = TRUE, lm.approx = TRUE,
  baseline = "inter")

shimlab/HMTree documentation built on May 29, 2019, 9:25 p.m.