R/ACTIONetExperiment-package.R

In shmohammadi86/ACE: ACTIONetExperiment container object

#' ACTIONet: Robust multi-resolution analysis of single-cell datasets
#'
#' Joint archetypal/network-based analysis for multi-resolution decomposition of single-cell states.
#'
#' @section Usage:
#'
#' \enumerate{
#' \item ?reduce.sce to reduce raw count matrix in an SummarizedExperiment objects.
#' \item ?run.ACTIONet to run ACTIONet on SummarizedExperiment objects.
#' }
#' @section Useful links:
#'
#' \enumerate{
#' \item Report bugs at \url{https://github.com/shmohammadi86/ACTIONet/issues}
#' \item Read the manuscript:
#' \href{https://www.biorxiv.org/content/10.1101/746339v2}{A multiresolution framework to characterize single-cell state landscapes}.
#' }
#'
#'
#' @name ACTIONetExperiment
#' @docType package
#' @author Shahin Mohammadi
#' @import Rcpp
#' @useDynLib ACTIONetExperiment, .registration=TRUE
##' @exportPattern ^[[:alpha:]]+ 
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