sigtools_autocorrelation: Plots the autocorrelation of several signals

In shohre73/sigtools: Visualizing Genomic Signals

Description

Plots the autocorrelation of several signals

Usage

sigtools_autocorrelation(
  path_mulColBedG,
  outdir = "autocorrelation",
  header = FALSE,
  prefix = "s",
  sep = "\t",
  resolution = 200L,
  lag = 50L,
  mode = "bins",
  x_label = NA,
  y_label = NA,
  img_title = NA,
  img_width = 10,
  img_height = 10,
  fontSize = 20
)

Arguments

path_mulColBedG	The path to the input file of multi-column bedgraph
outdir	Name of the output directory [default:autocorrelation]
header	Does your file include headers? [default:FALSE]
prefix	Your preferred prefix for naming the signals [default:'s']
sep	Your field separator character [default:'\t']
resolution	The bin size of the input file [default:200]
lag	The number of demanded shifts [default:50]
mode	If set to 'regions', the autocorrelation is calculated over adjacent elements mentioned in the additional bed file [default:bins] [options:'bins' or 'regions']
x_label	Label for the X axis
y_label	label for the Y axis
img_title	Title of the graph
img_width	Width of the saved image (cm) [default:10]
img_height	Height of the saved image (cm) [default:10]
fontSize	The font size of the saved image [default:20]

Examples

sigtools_autocorrelation("./test_data/E003-assays_chr21_bin200_bwtool.mcBedGraph", outdir = "autocorrelation", header = TRUE, prefix = 's', sep = '\t', resolution = 200L, lag = 50L, img_height = 10, img_width = 20)

shohre73/sigtools documentation built on April 2, 2021, 4:52 a.m.