sigtools_correlation: Plots a heatmap of pair-wise correlation of sets of genomic...

In shohre73/sigtools: Visualizing Genomic Signals

Description

Plots a heatmap of pair-wise correlation of sets of genomic signals

Usage

sigtools_correlation(
  path_mulColBedG_1,
  header_1 = FALSE,
  prefix_1 = "set1",
  path_mulColBedG_2,
  header_2 = FALSE,
  prefix_2 = "set2",
  outdir = "correlation",
  sep = "\t",
  enrichment = FALSE,
  x_label = NA,
  y_label = NA,
  img_title = NA,
  img_width = 10,
  img_height = 10,
  fontSize = 20
)

Arguments

path_mulColBedG_1	The path to the file of multi-column bedgraph to be considered as the first set of signals
header_1	Does your file include headers? [default:FALSE]
prefix_1	Your preferred prefix for naming the signals in the first set [default:'set1_']
path_mulColBedG_2	The path to the file of multi-column bedgraph to be considered as the second set of signals
header_2	Does your file include headers? [default:FALSE]
prefix_2	Your preferred prefix for naming the signals in the second set [default:'set2_']
outdir	Name of the output directory [default:correlation]
sep	Your field separator character [default:'\t']
enrichment	Do you like to plot the enrichment? [default:FALSE]
x_label	Label for the X axis
y_label	label for the Y axis
img_title	Title of the graph
img_width	Width of the saved image (cm) [default:10]
img_height	Height of the saved image (cm) [default:10]
fontSize	The font size of the saved image [default:20]

Examples

sigtools_correlation(path_mulColBedG_1 = "./test_data/E003-assays_chr21_bin200_bwtool.mcBedGraph", header_1 = TRUE, path_mulColBedG_2 = "./test_data/E003-assays_chr21_bin200_bwtool.mcBedGraph", header_2 = TRUE, outdir = "correlation", img_width = 15, img_height = 15)

shohre73/sigtools documentation built on April 2, 2021, 4:52 a.m.