Files in shooshtarilab/scATAC.Explorer

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

.Rbuildignore

.github/Clustering&CellTypeAnnotations.R .github/Hd5MatrixToSparseMatrix.R .github/ISSUE_TEMPLATE/user-dataset-submission.md .github/MarketMatrixToSparse.R .github/SparseMatrixToDenseMatrix.R .github/TextMatrixToSparseMatrix.R

.github/new_scATAC_metadata.csv

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/helpers.R R/queryATAC.R R/saveATAC.R

R/sysdata.rda

README.md

docs/CarcinomaDatasets.png

docs/CarcinomaDatasetsDataSummary.png

docs/GSE144692DataSummary.png

docs/GSE89362clusterPlot.png

docs/GSE89362countsMatrix.png

docs/MultipleDatasetExample.png

docs/UMAPresults.png

docs/cellTypeAnnotations.png

docs/datasetsWithCellType.png

docs/leukemiaQueryMetadataTable.png

docs/metadataTable.png

docs/saveATACfiles.png

docs/seuratObjectConversion.png

man/queryATAC.Rd man/saveATAC.Rd tests/testthat.R tests/testthat/testdownloadfuncts.R

vignettes/.gitignore

vignettes/scATAC.Explorer.Rmd

shooshtarilab/scATAC.Explorer documentation built on July 1, 2022, 7:52 p.m.