Man pages for shraddhapai/dataExplore
Stats and Viz for Data Exploration
| drawPropCircles | draw circle with area proportional to number |
| drawQQplot | generate qqplot |
| getVariance | compute row-wise variance |
| gradient_contour | plot contour map for 2D data |
| listMissing | flags variables and samples exceeding certain level of... |
| multiplot | Multiple plot function |
| pcaColored | PCA with samples coloured by group properties |
| pcaColored_2 | PCA with samples coloured by group properties |
| PCcorr_pheno | Correlate PC projections with phenotype |
| plotDendro | plot dendrogram |
| plotDendro_clr | dendrogram from unsupervised clustering |
| plotMissing_bar | show plotMissing_bar(x, ttl, showPct = TRUE, tpose = FALSE)... |
| plotMissMat | show data missingness as a chequered matrix |
| plotVariables_boxplot | plot unscaled and Z-scaled variable values as boxplot |
