plotDendro_clr: dendrogram from unsupervised clustering

In shraddhapai/dataExplore: Stats and Viz for Data Exploration

Description

dendrogram from unsupervised clustering

Usage

plotDendro_clr(M, pheno, groupPal, topVar = 10 * 1000L, verbose = TRUE,
  ttl = "", ...)

Arguments

M	(matrix) data values
pheno	(data.frame) row order should match column order of M. should contain column names for groupBy. Note that groupBy columns should be factors
groupPal	(list) keys are columns in pheno by which data are to be grouped. Values could be RColorBrewer palette names (char length 1) or a vector of colours to use as the palette. In this case the palette will follow the order of the variable levels
topVar	(integer) top most-variable probes to show
verbose	(logical) print messages
...	parameters for squash::dendromat

Value

No value. Side effect of printing a dendrogram)

shraddhapai/dataExplore documentation built on March 9, 2020, 9:17 a.m.