AffineAlignObj-class: An S4 object for class AffineAlignObj

AffineAlignObj-classR Documentation

An S4 object for class AffineAlignObj


s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.


Shubham Gupta,

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

See Also


shubham1637/DIAlign documentation built on Jan. 28, 2023, 1:22 a.m.