AlignObj-class | R Documentation |

s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M is calculated from s for alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by alignment algorithm. They must be the same. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

`doAlignmentCpp`

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