Man pages for shwetagopaul92/TFutils
TFutils
| cisbpTFcat | cisbpTFcat: data.frame with information on CISBP TFs for... |
| fimo16 | fimo16: GenomicFiles instance to AWS S3-resident FIMO bed for... |
| fimoMap | fimoMap: table with Mnnnn (motif PWM tags) and HGNC symbols... |
| genemodelDF | use EnsDb to generate an exon-level model of genes identified... |
| genemodForGviz | create a GeneRegionTrack instance for selected symbols |
| grabTab | create table of TF targets and related metadata |
| gwascat_hg19_chr17 | gwascat_hg19: GRanges of march 21 2018 EBI gwascat, limit to... |
| HGNCmap | simple accessor for HGNCmap component of TFCatalog |
| hocomoco.mono | hocomoco.mono: data.frame with information on HOCOMOCO TFs... |
| importFIMO | import a FIMO bed-like file |
| importFIMO_local_split | utility to read FIMO outputs from local resource(cluster),... |
| metadata_tf | metadata_tf: list with metadata (motif_if and hgnc_symbol)... |
| named_tf | named_tf: named list with the names being the hgnc_symbol of... |
| show-TFCatalog-method | produce a concise report on TFCatalog instance |
| TFCatalog | Constructor for TFCatalog |
| TFCatalog-class | define a structure to hold information about TFs from diverse... |
| tfhash | tfhash: data.frame with MSigDb TFs, TF targets as symbol or... |
| TFtargs | gadget to help sort through tags naming TFs |
| tftColl | tftColl: GSEABase GeneSetCollection for transcription factor... |
| tftCollMap | tftCollMap: data.frame with information on MSigDb TFs for... |
| URL_s3_tf | utility to generate link to biocfound bucket for FIMO TFBS... |
