importFIMO: import a FIMO bed-like file

Description Usage Arguments Value Examples

Description

import a FIMO bed-like file

Usage

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## S4 method for signature 'TabixFile,GRanges'
importFIMO(src, parms, ...)

## S4 method for signature 'character,missing'
importFIMO(src, parms, ...)

Arguments

src

TabixFile instance

parms

a GRanges instance delimiting the import; multiple GRanges can be used

...

passed to GenomicRanges::GRanges

Value

instance of GRanges

Examples

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if (requireNamespace("Rsamtools")) {
 tf = Rsamtools::TabixFile(system.file("M5946_1/chr1.bed.gz", package="TFutils"))
 importFIMO(tf, GenomicRanges::GRanges("chr1", IRanges::IRanges(1e6,11e6)))
 }

shwetagopaul92/TFutils documentation built on April 20, 2018, 7:57 a.m.