TFtargs: gadget to help sort through tags naming TFs

In shwetagopaul92/TFutils: TFutils

Description

gadget to help sort through tags naming TFs

Usage

TFtargs(gscoll = TFutils::tftColl, initTF = "VDR_Q3",
  gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog")

Arguments

gscoll	a GSEABase GeneSetCollection
initTF	character(1) initial TF string for app
gadtitle	character(1) a title for the gadget panel

Value

on app conclusion a data.frame is returned

Note

Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols

Examples

if (interactive()) TFtargs()

shwetagopaul92/TFutils documentation built on May 26, 2019, 4:32 a.m.