BED2txDb: Bedgraph to TranscriptDb object

In sidiropoulos/RNAprobR-old: An R package for analysis of massive parallel sequencing based RNA structure probing data

Description

Function to transform BED format file to Bioconductor TranscriptDb object

Usage

BED2txDb(input_bed_path)

Arguments

input_bed_path

Path to BED file. If 12 column BED provided, function is splice aware. If 6 column BED provided, function assumes no splicing.

Value

TranscriptDb object

Author(s)

Lukasz Jan Kielpinski, Nikos Sidiropoulos

Examples

write(strwrap("chr1\t134212702\t134229870\tENSMUST00000072177\t0\t+
             \t134212806\t134228958\t0\t8\t347,121,24,152,66,120,133,1973,
             \t0,8827,10080,11571,12005,13832,14433,15195,", width = 300),
      file="dummy.bed")
BED2txDb("dummy.bed")

sidiropoulos/RNAprobR-old documentation built on May 29, 2019, 9:58 p.m.