read_plink2_king: Read PLINK KING table
In signaturescience/skater: Utilities for SNP-Based Kinship Analysis
read_plink2_king R Documentation
Read PLINK KING table
Description
Reads in the output from plink2 --make-king-table (documentation).
Input file must have six columns, tab delimited:
id1 (member 1)
id2 (member 2)
nsnps
hethet: proportion of sites where both are heterozygous
k: Kinship Coefficient
Usage
read_plink2_king(file)
Arguments
file
Input file path
Value
A tibble containing the 6 columns from the plink2 --make-king-table output.
References
https://www.cog-genomics.org/plink/2.0/distance#make_king
Examples
plink2kingFile <- system.file("extdata", "plink2-king-table.tsv", package="skater", mustWork=TRUE)
plink2king <- read_plink2_king(plink2kingFile)
plink2king
plink2king %>% dplyr::filter(k>0.01)
signaturescience/skater documentation built on Feb. 11, 2023, 4:19 p.m.
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| read_plink2_king | R Documentation |
Read PLINK KING table
Description
Reads in the output from plink2 --make-king-table (documentation).
Input file must have six columns, tab delimited:
id1 (member 1)
id2 (member 2)
nsnps
hethet: proportion of sites where both are heterozygous
k: Kinship Coefficient
Usage
read_plink2_king(file)
Arguments
file |
Input file path |
Value
A tibble containing the 6 columns from the plink2 --make-king-table output.
References
https://www.cog-genomics.org/plink/2.0/distance#make_king
Examples
plink2kingFile <- system.file("extdata", "plink2-king-table.tsv", package="skater", mustWork=TRUE)
plink2king <- read_plink2_king(plink2kingFile)
plink2king
plink2king %>% dplyr::filter(k>0.01)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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