ENM results

Description Usage Arguments Value Functions Examples

Create a Leaflet map with the results of an SDM analysis. This map can be explored interactively in the viewer, so its possible to have a better comprehension of the outcomes of your SDM.

sdm_leaflet(
  sdm,
  mode = "bin",
  pts = NULL,
  pal = NULL,
  layernames = NULL,
  crs = "standard",
  cluster = FALSE
)

## S4 method for signature 'Raster'
sdm_leaflet(
  sdm,
  mode = "bin",
  pts = NULL,
  pal = NULL,
  layernames = NULL,
  crs = "standard",
  cluster = FALSE
)

## S4 method for signature 'data.frame'
sdm_leaflet(
  sdm,
  mode = "bin",
  pts = NULL,
  pal = NULL,
  layernames = NULL,
  crs = "standard",
  cluster = FALSE
)

`sdm`	The SDM/ENM result (or any other spatial analysis result). Can be either a data.frame (for a single SDM result) or in the Raster* format (multiple layers allowed). Binary maps should have just two values (0 for absence and 1 for presence). Difference maps ("quad" mode, see below) should have 4 values: 0 for unsuitable areas, 1 for areas that were lost, 2 for areas where there was gain of area and 3 for areas where suitability was mantained. Its easy to produce such a map from binary maps. Just multiply the future condition binary map by 2 and sum the current map.
`mode`	A character string indicating the mode of ploting. Should be one of "bin" (used for thresholded binary SDMs), "quad" (used for ploting difference maps between a binary reference map and a future one) or "continuous" (used for plotting continuous scale data).
`pts`	A data frame containing the presence or presence/absence points (optional). The first column should be longitude (x) and the sencond latitude (y). In the case of presence/absence data, an additional collumn should be provided, coded as 0 (absence) and 1 (presence).
`pal`	Character string indicating the name of the palette (see gen_pal). If not supplied, the default will be used.
`layernames`	An optional character vector indicating the names of the layers. This will be used in the legend. If not supplied, names will be extracted from the RasterLayer.
`crs`	Enables to change the default projection used in the Leaflet package. For now, not functional.
`cluster`	Should the points be clustered (i.e., aggregated)? Only valid if 'pts' is supplied. Default is FALSE.

A Leaflet map.

sdm_leaflet,Raster-method: Method for Raster*
sdm_leaflet,data.frame-method: Method for data frames

library(sdmvis)
# Load data
data("thresholded_sdm")
data("pa_data")
# Set names
sdm.names <- c("current", "future")

# Plot
sdm_leaflet(sdm = thresholded_sdm,
            mode = "bin",
            pts = pa_data,
           layernames = sdm.names)