gmb.coordinates: Convert genomic coordinates
In simecek/intermediate: eQTl/pQTL Mediation analysis
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Convert genomic coordinates from (chr, mb) representation to
cummulative (gmb) representation.
Usage
1
gmb.coordinates(chr, pos, chrlen = mouse.chrlen)
Arguments
chr
A character vector of chromosomes
pos
A numeric vector of positions (b or Mb)
chrlen
A vector with chromosome lengths (as in org.Mm.egCHRLENGTHS)
Details
A cummulative (gmb) form could be useful for example as
x-coordinate of a genomic plot.
Value
A numeric vector with cummulative (gmb) genomic coordinates.
See Also
Examples
1
gmb <- gmb.coordinates(Tmem68$annotation$chr, Tmem68$annotation$pos)
simecek/intermediate documentation built on May 29, 2019, 10:01 p.m.
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Description Usage Arguments Details Value See Also Examples
Description
Convert genomic coordinates from (chr, mb) representation to cummulative (gmb) representation.
Usage
1 | gmb.coordinates(chr, pos, chrlen = mouse.chrlen)
|
Arguments
chr |
A character vector of chromosomes |
pos |
A numeric vector of positions (b or Mb) |
chrlen |
A vector with chromosome lengths (as in |
Details
A cummulative (gmb) form could be useful for example as x-coordinate of a genomic plot.
Value
A numeric vector with cummulative (gmb) genomic coordinates.
See Also
Examples
1 | gmb <- gmb.coordinates(Tmem68$annotation$chr, Tmem68$annotation$pos)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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