plot.mediation: Plots conditioned LOD scores against genomic positions

Description Usage Arguments See Also Examples

Description

Plot LOD statistics calculated by mediation.scan against genomic positions.

Usage

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## S3 method for class 'mediation'
plot(med, col = "firebrick4", chrlen = mouse.chrlen,
  ...)

Arguments

med

A mediation object

col

A color of points

chrlen

A vector with chromosome lengths (as in org.Mm.egCHRLENGTHS)

See Also

identify.mediation, kplot

Examples

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data(Tmem68)
med <- mediation.scan(target=Tmem68$target,
                      mediator=Tmem68$mediator,
                      annotation=Tmem68$annotation,
                      covar=Tmem68$covar,
                      qtl.geno=Tmem68$qtl.geno)
plot(med)

simecek/intermediate documentation built on May 29, 2019, 10:01 p.m.