Files in simondrue/castle
Fortify your ddPCR analyses for low-frequency variant detection
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/castle_integrated.R
R/castle_integrated_utils.R
R/castle_simple.R
R/castle_simple_utils.R
R/constants.R
R/data_handling.R
R/likelihood_functions.R
R/plots.R
R/probabilities.R
R/simulate_data.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
castle.Rproj
docs/404.html
docs/LICENSE.html
docs/articles/castle.html
docs/articles/castle_files/header-attrs-2.10/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/figures/README-pressure-1.png
docs/reference/import_QS_files.html
docs/reference/index.html
docs/reference/pipe.html
docs/reference/simulate_droplet_counts.html
docs/reference/test_tumor_sample_integrated.html
docs/reference/test_tumor_sample_simple.html
docs/reference/train_integrated_ddpcr_model.html
docs/reference/train_simple_ddpcr_model.html
docs/sitemap.xml
inst/CITATION
inst/extdata/example_data/background_data_KRAS_G12D.csv
inst/extdata/example_data/test_samples/patient_1_plasma_KRAS_G12D.csv
inst/extdata/example_data/test_samples/patient_2_plasma_KRAS_G12D.csv
inst/extdata/test_data/patient_1.csv
inst/extdata/test_data/patient_2.csv
inst/extdata/test_data/patient_2_extra.csv
man/figures/README-pressure-1.png
man/import_QS_files.Rd
man/pipe.Rd
man/simulate_droplet_counts.Rd
man/test_tumor_sample_integrated.Rd
man/test_tumor_sample_simple.Rd
man/train_integrated_ddpcr_model.Rd
man/train_simple_ddpcr_model.Rd
tests/testthat.R
tests/testthat/_snaps/castle_integrated.md
tests/testthat/_snaps/castle_simple.md
tests/testthat/_snaps/data_handling.md
tests/testthat/test-castle_integrated.R
tests/testthat/test-castle_simple.R
tests/testthat/test-data_handling.R
tests/testthat/test-simulate_data.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/castle.Rmd
