Files in simonecollier/lizardHMM
Fitting Lizard Movement Data with HMMs
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/covariate_analysis.R
R/fit_tpm.R
R/gam0_allprobs.R
R/gam0_ci_functions.R
R/gam0_fit_hmm.R
R/gam0_forecast_psr.R
R/gam0_loglikelihood.R
R/gam0_natural_params.R
R/gam0_viterbi.R
R/gam0_working_params.R
R/gam_allprobs.R
R/gam_ci_functions.R
R/gam_fit_hmm.R
R/gam_forecast_psr.R
R/gam_logforward.R
R/gam_loglikelihood.R
R/gam_natural_params.R
R/gam_viterbi.R
R/gam_working_params.R
R/helpers.R
R/imports.R
R/norm0_natural_params.R
R/norm0_working_params.R
R/norm_allprobs.R
R/norm_ci_functions.R
R/norm_fit_hmm.R
R/norm_forecast_psr.R
R/norm_generate_sample.R
R/norm_logforward.R
R/norm_loglikelihood.R
R/norm_natural_params.R
R/norm_viterbi.R
R/norm_working_params.R
R/psr_plotting.R
R/timeseries_histogram_plotting.R
README.Rmd
README.md
lizardHMM.Rproj
man/covariate_ci.Rd
man/euclidean_distance.Rd
man/figures/README-hist_ci-1.png
man/figures/README-hist_ci-2.png
man/figures/README-norm_hist-1.png
man/figures/README-norm_hist-2.png
man/figures/README-timeseries_plot-1.png
man/figures/README-timeseries_plot-2.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-2-2.png
man/figures/README-unnamed-chunk-2-3.png
man/figures/README-unnamed-chunk-2-4.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-3-2.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-4-2.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-5-2.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-6-2.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-7-2.png
man/figures/README-viterbi-1.png
man/figures/README-viterbi-2.png
man/fit_tpm.Rd
man/foralg.Rd
man/foralg_covar.Rd
man/gam0_allprobs.Rd
man/gam0_ci.Rd
man/gam0_ci_data.Rd
man/gam0_fit_hmm.Rd
man/gam0_forecast_psr.Rd
man/gam0_hist_ci.Rd
man/gam0_hist_viterbi.Rd
man/gam0_loglikelihood.Rd
man/gam0_natural_params.Rd
man/gam0_natural_vec.Rd
man/gam0_viterbi.Rd
man/gam0_working_ind.Rd
man/gam0_working_params.Rd
man/gam_allprobs.Rd
man/gam_ci.Rd
man/gam_ci_data.Rd
man/gam_dist_ci_data.Rd
man/gam_fit_hmm.Rd
man/gam_forecast_psr.Rd
man/gam_hist_ci.Rd
man/gam_logforward.Rd
man/gam_loglikelihood.Rd
man/gam_natural_params.Rd
man/gam_natural_vec.Rd
man/gam_viterbi.Rd
man/gam_working_ind.Rd
man/gam_working_params.Rd
man/norm0_natural_params.Rd
man/norm0_working_ind.Rd
man/norm0_working_params.Rd
man/norm_allprobs.Rd
man/norm_ci.Rd
man/norm_ci_data.Rd
man/norm_dist_ci_data.Rd
man/norm_fit_hmm.Rd
man/norm_forecast_psr.Rd
man/norm_generate_sample.Rd
man/norm_hist.Rd
man/norm_hist_ci.Rd
man/norm_logforward.Rd
man/norm_loglikelihood.Rd
man/norm_natural_params.Rd
man/norm_natural_vec.Rd
man/norm_viterbi.Rd
man/norm_working_ind.Rd
man/norm_working_params.Rd
man/plot_delta_entries.Rd
man/plot_tpm_entries.Rd
man/psr_acf.Rd
man/psr_hist.Rd
man/psr_plot.Rd
man/psr_qq.Rd
man/split_vec.Rd
man/timeseries_plot.Rd
src/.gitignore
src/RcppExports.cpp
src/code.cpp
src/foralg.cpp
src/foralg_covar.cpp
tests/testthat.R
tests/testthat/test-norm_working_params.R
