complete_ped_links: Function to complete pedigree links

In simplydch/GeneDrop: Drops Genes Down A Pedigree And Tracks Alleles

Function to complete pedigree links

Description

This fills in missing pedigree links in a random fashion using plausable individuals. It for individuals with missing sires or dams it selects a parent that could have been alive within a suitable time period

Usage

complete_ped_links(
  pedigree,
  founders,
  rep_years_sire = c(2, 10),
  rep_years_dam = c(2, 10),
  cohorts = NULL
)

Arguments

pedigree	A data frame or matrix. A pedigree with ID, Sire and Dam, Sex columns
founders	A vector of founder IDs matching those in the pedigree
rep_years_sire	vector. A vector of length 2, the first value is the time until a male is reproductively active and the second value the time a male is no longer reproductively active. Default: c(2,10)
rep_years_dam	vector. A vector of length 2, the first value is the time until a female is reproductively active and the second value the time a female is no longer reproductively active. Default: c(2,10)
cohorts	An optional vector, the same length of the pedigree containing cohort information which can be provided if there is not a cohort column in the pedigree

Examples

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simplydch/GeneDrop documentation built on July 8, 2024, 8:17 p.m.