asthma: asthma

In singha53/omicsCentralDatasets: Houses datasets use to demonstrate functions in the omicsCentral set of packages

Description

Asthma datasets: cell-type frequencies, gene expression, metabolite expression, gene modules, metabolite modules and metabolite annotations and demographics data.

Usage

data(asthma)

Format

An object of class "list";

demo

28 samples x 3 phenotypic variables (time, response and subject)

cc

28 samples x 23 cell-types

mrna

28 samples x 5443 gene transcripts

met

28 samples x 292 metabolites

metAnn

292 metabolites x 38 annotation variables

mrnaMod

28 samples x 229 gene modules based on the KEGG database

metMod

28 samples x 60 metabolites modules

References

Singh et al. DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays. Bioinformatics, Volume 35, Issue 17, 1 September 2019, Pages 3055–3062. (DIABLO datasets)

Examples

library(omicsCentralDatasets)
data(asthma)

singha53/omicsCentralDatasets documentation built on March 7, 2020, 2:02 a.m.