pathwayDB: pathwayDB

Description Usage Format References Examples

Description

Various pathway datasets (BioCarta, KEGG, Reactome, WikiPathways) download from Enrichr and converted to tidy data format.

Usage

1

Format

An object of class "data.frame";

Pathways

Name of pathway/geneset

Genes

Gene symbol

DB

Name of database/annotation

References

Chen EY et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14). (Data preprocessing)

Examples

1
2
library(omicsCentralDatasets)
data(pathwayDB)

singha53/omicsCentralDatasets documentation built on March 7, 2020, 2:02 a.m.