besthint: Best hint for alignement
In sinnweja/kinship2: Pedigree Functions
besthint R Documentation
Best hint for alignement
Description
When computer time is cheap, use this routine to get a "best" pedigree.
Usage
besthint(ped, wt = c(1000, 10, 1), tolerance = 0)
Arguments
tolerance
Details
The autohint routine will rearrange sibling order, but not founder order.
This calls autohint with every possible founder order, and finds that
plot with the least "stress":
wt[1] * number of dotted arcs
+ wt[2] * lengths of dotted arcs
+ wt[3] * lengths of parent-child
bends perfect: if anything meets this stress level, keep it
See Also
sinnweja/kinship2 documentation built on July 8, 2023, 11:26 p.m.
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| besthint | R Documentation |
Best hint for alignement
Description
When computer time is cheap, use this routine to get a "best" pedigree.
Usage
besthint(ped, wt = c(1000, 10, 1), tolerance = 0)
Arguments
tolerance |
Details
The autohint routine will rearrange sibling order, but not founder order. This calls autohint with every possible founder order, and finds that plot with the least "stress": wt[1] * number of dotted arcs + wt[2] * lengths of dotted arcs + wt[3] * lengths of parent-child bends perfect: if anything meets this stress level, keep it
See Also
,
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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